DynaNets

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Publications
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Authors Title Journal Year Type Links
L. Isella et al. What's in a crowd? Analysis of face-to-face behavioral networks Journal of Theoretical Biology 271, 166 (2011) 2011 -- Webpage Link
MC. Prosperi et al. Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing. BMC Bioinformatics. 2011 Jan 5;12(1):5. PMID: 21208435 2011 -- Webpage Link
Juliette Stehlé et al. High-Resolution Measurements of Face-to-Face Contact Patterns in a Primary School PLoS ONE 6(8): e23176. 2011 -- Webpage Link Electronic Paper Link
László Gulyás et al. AN ESTIMATION OF THE SHORTEST AND LARGEST AVERAGE PATH LENGTH IN GRAPHS OF GIVEN DENSITY Proceedings of EPNACS 2011 within ECCS’11 Emergent Properties in Natural and Artificial Complex Systems 2011 -- Electronic Paper Link
Richárd O. Legéndi László Gulyás EFFECTS OF TIME-DEPENDENT EDGE DYNAMICS ON PROPERTIES OF CUMULATIVE NETWORKS Proceedings of EPNACS 2011 within ECCS’11 Emergent Properties in Natural and Artificial Complex Systems 2011 -- Electronic Paper Link
BE Nichols et al. HIV testing and antiretroviral treatment strategies for prevention of HIV infection: impact on antiretroviral drug resistance Journal of internal medicine 2011 2011 -- Webpage Link
Dineke Frentz et al. Estimates of HIV Transmitted Drug Resistance Can be Inflated Due to Natural Sequence Polymorphisms J Acquir Immune Defic Syndr Volume 58, Number 5, December 15, 2011 2011 -- Electronic Paper Link
Dineke Frentz Transmission of HIV resistance to non-nucleoside RT inhibitors is rising in MSM in Europe Presentation at the 5th Netherlands Conference on HIV Pathogenesis, Prevention and Treatment 2011 --
Rick Quax et al. SEECN: Simulating complex systems using dynamic complex networks International Journal for Multi-scale Computational Engineering 2011 article Webpage Link
S Di Giambenedetto et al. Update on emergence of HIV-1 resistance to antiretroviral drug classes in an Italian national database: 2007-2009. Clin Microbiol Infect. 2011 Apr 25. 2011 -- Webpage Link
MC Prosperi et al. A novel methodology for large-scale phylogeny partition. Nat Commun. 2011;2:321. Epub 2011 May 24. PMID: 21610724 [PubMed - indexed for MEDLINE] 2011 -- Webpage Link
C Torti et al. Factors influencing the normalization of CD4+ T-cell count, percentage and CD4+/CD8+ T-cell ratio in HIV-infected patients on long-term suppressive antiretroviral therapy. Clin Microbiol Infect. 2012 May;18(5):449-58. doi: 10.1111/j.1469-0691.2011.03650.x. 2011 -- Webpage Link
A De Luca et al. Interpretation of genotypic HIV-1 resistance to darunavir and virological response: validation of available systems and of a new score Antivir Ther. 2011;16(4):489-97. PubMed PMID: 21685536 2011 -- Electronic Paper Link
Paolo Bajardi et al. Optimizing surveillance for livestock disease spreading through animal movements -- 2011 --
Alain Barrat et al. Dynamical and bursty interactions in social networks PHYSICAL REVIEW E 81, 035101(R) (2010) 2010 -- Electronic Paper Link
Muhittin Mungan José J. Ramasco Stability of maximum-likelihood-based clustering methods: exploring the backbone of classifications Journal of Statistical Mechanics 2010 -- Electronic Paper Link
Andrea Lancichinett et al. Statistical significance of communities in networks Physical Review E 81, 046110 2010 -- Electronic Paper Link
Mark R. Meiss et al. Agents, Bookmarks and Clicks: A topical model of Web traffic -- 2010 -- Electronic Paper Link
László Gulyás et al. Betweenness Centrality Dynamics in Networks of Changing Density Presented at the 19TH INTERNATIONAL SYMPOSIUM ON MATHEMATICAL THEORY OF NETWORKS AND SYSTEMS (MTNS 2010) 2010 -- Electronic Paper Link
George Kampis László Gulyás Generative characterization of sexual contact networks Presented at NetSci 2010 THE INTERNATIONAL SCHOOL AND CONFERENCE ON NETWORK SCIENCE 10-14 May, 2010, MIT, Boston 2010 -- Electronic Paper Link
George Kampis László Gulyás Dynamically changing generative sexual networks Lecture held at the 10th ICCS (International Conference on Computational Science), June 2, Amsterdam 2010 -- Electronic Paper Link
Shan Mei et al. Quantitatively Evaluating Interventions in the Influenza A (H1N1) Epidemic on China Campus Grounded on Individual-based Simulations Lecture held at the 10th ICCS (International Conference on Computational Science), June 2, Amsterdam. 2010 -- Electronic Paper Link
MC Prosperi et al. Comparative determination of HIV-1 coreceptor tropism by Enhanced Sensitivity Trofile, gp120 V3-loop RNA and DNA genotyping Retrovirology 2010 -- Webpage Link
László Gulyás et al. Finding Trendsetters in Longitudinal Networks COINS (Collaborative Innovation Networks) conference. October 8-11, Savannah, USA 2010 -- Electronic Paper Link
George Kampis et al. Mapping Science:Bio-­‐Inspired Methods for Dynamic Network Analysis Conference “Modelling science – Understanding, forecasting, and communicating the science system”, Rathenau Instituut, Amsterdam 2010 -- Electronic Paper Link
 
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Highlights

This article is 'Highly accessed'  (total accesses to this article since publication: 1197) relative to age  in  BioMed Central:
Increasing risk behaviour can outweigh the benefits of antiretroviral drug treatment on the HIV incidence among men-having-sex-with-men in Amsterdam
Shan Mei, Rick Quax, David VAN de Vijver, Yifan Zhu and P.m.a. Sloot BMC Infectious Diseases, 11:118   (11 May 2011)

As of August 27, the most downloaded/accessed paper in BMC Systems Biology is: D. van Dijk et al.: Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks, BMC Systems Biology, vol. 4, nr 1 pp. 96+17. 2010.

This paper received the ICCS best paper award 2010:
N. Zarrabi et al.: Modeling HIV-1 intracellular replication,
Procedia Computer Science vol. 1, nr 1 pp. 555-564. Elsevier B.V., Amsterdam, May 2010.

Contact

Project Coordinator:
Prof. Dr P.M.A. Sloot
p.m.a.sloot@uva.nl

Project Management:
Dr. Alma Erenstein
A.M.Erenstein@uva.nl

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EU
EU Grant Agreement Number: 233847
 

BONUS Grant Number: OMFB-00237/2010

 
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