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Publications
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Authors Title Journal Year Type Links
D. van Dijk et al. Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks BMC Systems Biology 2010 -- Webpage Link
Q.C. Bui et al. Extracting causal relations on HIV drug resistance from literature BMC Bioinformatics 2010 -- Webpage Link
D. van Dijk et al. Individual-based simulation of sexual selection: A quantitative genetic approach P.M.A. Sloot; G.D. van Albada and J. Dongarra, editors, ICCS 2010, (Proceedings of the 10th International Conference on Computational Science, May 31 - June 2, Amsterdam) in series Procedia Computer Science 2010 -- Webpage Link
D. Frentz et al. Comparison of HIV-1 Genotypic Resistance Test Interpretation Systems in Predicting Virological Outcomes Over Time PLoS ONE 2010 -- Webpage Link
A.G. Hoekstra et al. Simulating Complex Systems by Cellular Automata -- 2010 -- Webpage Link
S. Mei et al. Complex Agent Networks explaining the HIV epidemic among homosexual men in Amsterdam Mathematics and Computers in Simulation 2010 -- Webpage Link
P.M.A Sloot A.G. Hoekstra Multi-scale modelling in computational biomedicine Brief in Bioinform 2010 -- Webpage Link
N. Zarrabi et al. Modeling HIV-1 intracellular replication: two simulation approaches Procedia Computer Science 2010 -- Webpage Link
DA Vijver CA Boucher The risk of HIV drug resistance following implementation of pre-exposure prophylaxis -- 2010 -- Webpage Link
Mattia C. F. Prosperi et al. The Threshold Bootstrap Clustering: A New Approach to Find Families or Transmission Clusters within Molecular Quasispecies -- 2010 -- Webpage Link Electronic Paper Link
Andrea Apolloni et al. Optimal vaccine allocation and vulnerability ECCS 10, Lisbon University 2010 Poster Electronic Paper Link
S. Mei et al. Complex Agent Networks explaining the HIV epidemic among homosexual men in Amsterdam Mathematics and Computers in Simulation, vol. 80, nr 5 pp. 1018-1030 2010 -- Electronic Paper Link
M. Prosperi et al. Large Scale Phylodynamics of HIV-1 in Italy: Analysis on Epidemic and Resistance Transmission -- 2010 -- Electronic Paper Link
M. Prosperi Mathematical Models for HIV-1 Therapy Optimisation -- 2010 -- Electronic Paper Link
José J. Ramasco et al. Optimization of transport protocols with path-length constraints in complex networks Physical Review E 82, 036119 (2010) 2010 -- Webpage Link
Duygu Balcan et al. Modeling the spatial spread of infectious diseases: The GLobal Epidemic and Mobility computational model Journal of Computational Science 1, 132 (2010) 2010 -- Webpage Link
Filippo Radicchi et al. Combinatorial approach to Modularity Physical Review E 82, 026102 (2010) 2010 -- Webpage Link
Marco Ajelli et al. Comparing large-scale computational approaches to epidemic modeling: agent-based versus structured metapopulation models BMC Infectious Diseases 10, 190 (2010) 2010 -- Webpage Link
Muhittin Mungan José J. Ramasco Stability of maximum-likelihood-based clustering methods: exploring the backbone of classifications (a.k.a. Who is keeping you in that community?) J. Stat. Mech. (2010) P04028 2010 -- Webpage Link
C. Cattuto et al. Dynamics of person-to-person interactions from distributed RFID sensor networks PLoS ONE 5(7), e11596 (2010) 2010 --
A De Luca et al. Resistance considerations in sequencing of antiretroviral therapy in low-middle income countries with currently available options. Curr Opin HIV AIDS. 2010 Jan;5(1):27-37. Review. PMID: 20046145 [PubMed - indexed for MEDLINE] 2010 -- Webpage Link
Duygu Balcan et al. Seasonal transmission potential and activity peaks of the new influenza A(H1N1): a Monte Carlo likelihood analysis based on human mobility BMC Medicine 2009 -- Webpage Link Electronic Paper Link
George Kampis et al. Dynamic Social Networks and the Textrend/CIShell Framework Presented at the conference on Applied Social Network Analysis (ASNA) 2009 -- Electronic Paper Link
George Kampis Non-AristotelianEntities Invited presentation at ESF-COST High-Level Research Conference Systems Chemistry II: Evolution and Systems, Balatonfüred, Hungary 18 - 23 October 2009. 2009 -- Electronic Paper Link
Paolo Bajardi et al. Modeling vaccination campaigns and the Fall/Winter 2009 activity of the new A(H1N1) influenza in the Northern Hemisphere Emerging Health Threats Journal 2:e11 (2009) 2009 -- Webpage Link
 
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Highlights

This article is 'Highly accessed'  (total accesses to this article since publication: 1197) relative to age  in  BioMed Central:
Increasing risk behaviour can outweigh the benefits of antiretroviral drug treatment on the HIV incidence among men-having-sex-with-men in Amsterdam
Shan Mei, Rick Quax, David VAN de Vijver, Yifan Zhu and P.m.a. Sloot BMC Infectious Diseases, 11:118   (11 May 2011)

As of August 27, the most downloaded/accessed paper in BMC Systems Biology is: D. van Dijk et al.: Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks, BMC Systems Biology, vol. 4, nr 1 pp. 96+17. 2010.

This paper received the ICCS best paper award 2010:
N. Zarrabi et al.: Modeling HIV-1 intracellular replication,
Procedia Computer Science vol. 1, nr 1 pp. 555-564. Elsevier B.V., Amsterdam, May 2010.

Contact

Project Coordinator:
Prof. Dr P.M.A. Sloot
p.m.a.sloot@uva.nl

Project Management:
Dr. Alma Erenstein
A.M.Erenstein@uva.nl

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